Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| lars-1 | lars-2 | R74.1.1 | ZK524.3a.1 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.931 |
| lars-1 | mrpl-13 | R74.1.1 | F13G3.11.1 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | Mitochondrial Ribosomal Protein, Large. | 0.469 |
| lars-1 | mrpl-2 | R74.1.1 | F56B3.8a.1 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | Ribosomal_L2_C domain-containing protein. | 0.476 |
| lars-1 | rpl-16 | R74.1.1 | M01F1.2.2 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | 60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. | 0.487 |
| lars-1 | rpl-2 | R74.1.1 | B0250.1.1 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | 60S ribosomal protein L8. | 0.593 |
| lars-1 | rpl-39 | R74.1.1 | C26F1.9.1 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | 60S ribosomal protein L39. | 0.705 |
| lars-1 | srt-1 | R74.1.1 | C13B7.1.1 | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | Serpentine Receptor, class T. | 0.497 |
| lars-2 | lars-1 | ZK524.3a.1 | R74.1.1 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | 0.931 |
| lars-2 | mrpl-13 | ZK524.3a.1 | F13G3.11.1 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Mitochondrial Ribosomal Protein, Large. | 0.480 |
| lars-2 | mrpl-2 | ZK524.3a.1 | F56B3.8a.1 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Ribosomal_L2_C domain-containing protein. | 0.487 |
| lars-2 | rpl-16 | ZK524.3a.1 | M01F1.2.2 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. | 0.469 |
| lars-2 | rpl-2 | ZK524.3a.1 | B0250.1.1 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 60S ribosomal protein L8. | 0.476 |
| lars-2 | rpl-39 | ZK524.3a.1 | C26F1.9.1 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 60S ribosomal protein L39. | 0.705 |
| lars-2 | srt-1 | ZK524.3a.1 | C13B7.1.1 | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Serpentine Receptor, class T. | 0.692 |
| mrpl-13 | lars-1 | F13G3.11.1 | R74.1.1 | Mitochondrial Ribosomal Protein, Large. | Leucine--tRNA ligase; Involved in protein synthesis. Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. | 0.469 |
| mrpl-13 | lars-2 | F13G3.11.1 | ZK524.3a.1 | Mitochondrial Ribosomal Protein, Large. | Anticodon_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.480 |
| mrpl-13 | mrpl-2 | F13G3.11.1 | F56B3.8a.1 | Mitochondrial Ribosomal Protein, Large. | Ribosomal_L2_C domain-containing protein. | 0.997 |
| mrpl-13 | rpl-2 | F13G3.11.1 | B0250.1.1 | Mitochondrial Ribosomal Protein, Large. | 60S ribosomal protein L8. | 0.951 |
| mrpl-13 | rpl-21 | F13G3.11.1 | C14B9.7.1 | Mitochondrial Ribosomal Protein, Large. | 60S ribosomal protein L21; Belongs to the eukaryotic ribosomal protein eL21 family. | 0.983 |
| mrpl-13 | rpl-39 | F13G3.11.1 | C26F1.9.1 | Mitochondrial Ribosomal Protein, Large. | 60S ribosomal protein L39. | 0.831 |
page 1 of 5