STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soap-1Sorting Of Apical Proteins. (2076 aa)    
Predicted Functional Partners:
C52B9.4
Uncharacterized protein.
   
  
 0.811
C34D4.4
Uncharacterized Golgi apparatus membrane protein-like protein C34D4.4.
      
 0.800
apg-1
AP-1 complex subunit gamma.
   
 
 0.765
T28D9.1
Uncharacterized protein T28D9.1.
      
 0.758
F27D9.2
MFS domain-containing protein.
      
 0.698
C27A7.1
Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1; Probable phosphodiesterase.
      
 0.667
vps-8
Vps8 domain-containing protein.
   
  
 0.562
C09D4.1
Uncharacterized MFS-type transporter C09D4.1; Belongs to the major facilitator superfamily. Feline leukemia virus subgroup C receptor (TC 2.A.1.28.1) family.
      
 0.560
tns-1
Tensin homolog; Probable phosphatase which regulates axon regeneration after injury by linking the svh-2 and integrin signaling pathways.
      
 0.537
marc-3
RING-CH-type domain-containing protein.
      
 0.533
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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