Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| emb-4 | hrde-1 | Y80D3A.2a.1 | C16C10.3.1 | Uncharacterized protein. | Uncharacterized protein C16C10.3. | 0.946 |
| emb-4 | set-32 | Y80D3A.2a.1 | C41G7.4.1 | Uncharacterized protein. | SET domain-containing protein. | 0.474 |
| hrde-1 | emb-4 | C16C10.3.1 | Y80D3A.2a.1 | Uncharacterized protein C16C10.3. | Uncharacterized protein. | 0.946 |
| hrde-1 | nrde-1 | C16C10.3.1 | C14B1.6a.1 | Uncharacterized protein C16C10.3. | Uncharacterized protein. | 0.914 |
| hrde-1 | nrde-2 | C16C10.3.1 | T01E8.5.1 | Uncharacterized protein C16C10.3. | Nuclear exosome regulator NRDE2; Protein of the nuclear speckles that regulates RNA exosomal degradation (By similarity). Involved in short interfering RNAs- mediated silencing in nuclei. Functions with nrde-3 in the nuclear RNA-mediated gene silencing (RNAi) pathway to regulate gene expression via inhibition of RNA polymerase II during the elongation phase of transcription. Required for exogenous RNAi-induced H3K27 methylation. Belongs to the NRDE2 family. | 0.917 |
| hrde-1 | nrde-3 | C16C10.3.1 | R04A9.2.1 | Uncharacterized protein C16C10.3. | Nuclear RNAi defective-3 protein; Transports small interfering RNAs (siRNAs) from the cytoplasm to the nucleus. Required for RNA interference (RNAi) in nuclei. Required for exogenous RNAi-induced H3K27 methylation. | 0.910 |
| hrde-1 | prg-1 | C16C10.3.1 | D2030.6.1 | Uncharacterized protein C16C10.3. | Piwi-like protein; Belongs to the argonaute family. | 0.934 |
| hrde-1 | rde-1 | C16C10.3.1 | K08H10.7.1 | Uncharacterized protein C16C10.3. | RNA interference promoting factor RDE-1. | 0.932 |
| hrde-1 | rde-12 | C16C10.3.1 | F58G11.2a.1 | Uncharacterized protein C16C10.3. | DEAD-box ATP-dependent RNA helicase rde-12; Probable ATP-dependent RNA helicase involved in RNAi-mediated gene silencing. Specifically required in the endogenous siRNA pathway for biogenesis of secondary endogenous small interfering RNA (siRNA) intermediates called 22G-RNAs. May associate with and recruit rde- 10 to primary siRNA-targeted mRNA for secondary siRNA synthesis. May be recruited to target mRNAs by rde-1 and/or ergo-1. | 0.938 |
| hrde-1 | rde-4 | C16C10.3.1 | T20G5.11.1 | Uncharacterized protein C16C10.3. | RNA interference promoting factor. | 0.936 |
| hrde-1 | set-25 | C16C10.3.1 | Y43F4B.3.1 | Uncharacterized protein C16C10.3. | Histone-lysine N-methyltransferase set-25; Histone methyltransferase that specifically trimethylates 'Lys-9' of histone H3 using mono- and dimethylated H3 'Lys-9' as substrate. Acts redundantly with the methyltransferase met-2 to position chromosome arms at the nuclear lamina. Required for small-RNA-induced H3K9 methylation. Together with met-2, protects and stabilizes repeat-rich genomic regions by suppressing transcription- induced replication stress through methylation of H3K9. | 0.901 |
| hrde-1 | set-32 | C16C10.3.1 | C41G7.4.1 | Uncharacterized protein C16C10.3. | SET domain-containing protein. | 0.946 |
| nrde-1 | hrde-1 | C14B1.6a.1 | C16C10.3.1 | Uncharacterized protein. | Uncharacterized protein C16C10.3. | 0.914 |
| nrde-1 | nrde-2 | C14B1.6a.1 | T01E8.5.1 | Uncharacterized protein. | Nuclear exosome regulator NRDE2; Protein of the nuclear speckles that regulates RNA exosomal degradation (By similarity). Involved in short interfering RNAs- mediated silencing in nuclei. Functions with nrde-3 in the nuclear RNA-mediated gene silencing (RNAi) pathway to regulate gene expression via inhibition of RNA polymerase II during the elongation phase of transcription. Required for exogenous RNAi-induced H3K27 methylation. Belongs to the NRDE2 family. | 0.923 |
| nrde-1 | nrde-3 | C14B1.6a.1 | R04A9.2.1 | Uncharacterized protein. | Nuclear RNAi defective-3 protein; Transports small interfering RNAs (siRNAs) from the cytoplasm to the nucleus. Required for RNA interference (RNAi) in nuclei. Required for exogenous RNAi-induced H3K27 methylation. | 0.894 |
| nrde-1 | prg-1 | C14B1.6a.1 | D2030.6.1 | Uncharacterized protein. | Piwi-like protein; Belongs to the argonaute family. | 0.706 |
| nrde-1 | rde-1 | C14B1.6a.1 | K08H10.7.1 | Uncharacterized protein. | RNA interference promoting factor RDE-1. | 0.451 |
| nrde-1 | set-25 | C14B1.6a.1 | Y43F4B.3.1 | Uncharacterized protein. | Histone-lysine N-methyltransferase set-25; Histone methyltransferase that specifically trimethylates 'Lys-9' of histone H3 using mono- and dimethylated H3 'Lys-9' as substrate. Acts redundantly with the methyltransferase met-2 to position chromosome arms at the nuclear lamina. Required for small-RNA-induced H3K9 methylation. Together with met-2, protects and stabilizes repeat-rich genomic regions by suppressing transcription- induced replication stress through methylation of H3K9. | 0.760 |
| nrde-1 | set-32 | C14B1.6a.1 | C41G7.4.1 | Uncharacterized protein. | SET domain-containing protein. | 0.825 |
| nrde-2 | hrde-1 | T01E8.5.1 | C16C10.3.1 | Nuclear exosome regulator NRDE2; Protein of the nuclear speckles that regulates RNA exosomal degradation (By similarity). Involved in short interfering RNAs- mediated silencing in nuclei. Functions with nrde-3 in the nuclear RNA-mediated gene silencing (RNAi) pathway to regulate gene expression via inhibition of RNA polymerase II during the elongation phase of transcription. Required for exogenous RNAi-induced H3K27 methylation. Belongs to the NRDE2 family. | Uncharacterized protein C16C10.3. | 0.917 |
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