STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C16C8.5Ubiquitin-like domain-containing protein. (180 aa)    
Predicted Functional Partners:
rpl-19
60S ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 
 0.722
rpl-34
Ribosomal Protein, Large subunit.
   
 
 0.701
rps-26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 
 0.700
rps-1
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 
 0.697
rps-18
Ribosomal Protein, Small subunit; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.697
rps-21
40S ribosomal protein S21.
   
   0.696
rpl-36
60S ribosomal protein L36; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL36 family.
   
 
 0.693
rpl-24.1
60S ribosomal protein L24; Belongs to the eukaryotic ribosomal protein eL24 family.
   
   0.691
rps-28
40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family.
   
 
 0.691
rpl-33
60S ribosomal protein L35a; Belongs to the eukaryotic ribosomal protein eL33 family.
   
 
 0.689
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.