STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C17G10.1Fe2OG dioxygenase domain-containing protein. (480 aa)    
Predicted Functional Partners:
tufm-2
Mitochondrial elongation factor Tu homologue.
   
   0.701
ttc-4
TeTratriCopeptide repeat domain protein related.
 
 
    0.686
trm-1
tRNA (guanine(26)-N(2))-dimethyltransferase; Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.
   
 
 0.685
col-175
Col_cuticle_N domain-containing protein.
   
  
 0.660
erfa-3
Tr-type G domain-containing protein.
   
 
 0.653
tufm-1
Tr-type G domain-containing protein.
   
   0.648
sbp-1
BHLH domain-containing protein.
   
 
 0.645
srd-72
Serpentine Receptor, class D (Delta).
      
 0.618
F56A4.10
MFS domain-containing protein.
      
 0.614
erfa-1
Eukaryotic peptide chain release factor subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Belongs to the eukaryotic release factor 1 family.
   
 
 0.602
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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