pals-5 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pals-5

Protein containing ALS2cr12 (ALS2CR12) signature. (304 aa)

Predicted Functional Partners:

F26F2.1

0.951

F26F2.4

0.936

F26F2.3

0.911

W04B5.5

0.851

pals-28

0.848

pals-11

0.842

pals-25

0.811

pals-22

0.809

ZC196.3

0.781

pals-4

0.779

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F26F2.1	F26F2.3	F26F2.1.1	F26F2.3.1	Uncharacterized protein.	Uncharacterized protein.	0.950
F26F2.1	F26F2.4	F26F2.1.1	F26F2.4b.1	Uncharacterized protein.	Uncharacterized protein.	0.955
F26F2.1	W04B5.5	F26F2.1.1	W04B5.5.1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.887
F26F2.1	ZC196.3	F26F2.1.1	ZC196.3a.1	Uncharacterized protein.	Uncharacterized protein.	0.783
F26F2.1	pals-22	F26F2.1.1	C29F9.1.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.741
F26F2.1	pals-25	F26F2.1.1	T17A3.2.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.697
F26F2.1	pals-28	F26F2.1.1	B0284.4.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.860
F26F2.1	pals-4	F26F2.1.1	C17H1.5.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.492
F26F2.1	pals-5	F26F2.1.1	C17H1.6.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.951
F26F2.3	F26F2.1	F26F2.3.1	F26F2.1.1	Uncharacterized protein.	Uncharacterized protein.	0.950
F26F2.3	F26F2.4	F26F2.3.1	F26F2.4b.1	Uncharacterized protein.	Uncharacterized protein.	0.985
F26F2.3	pals-22	F26F2.3.1	C29F9.1.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.758
F26F2.3	pals-25	F26F2.3.1	T17A3.2.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.693
F26F2.3	pals-28	F26F2.3.1	B0284.4.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.912
F26F2.3	pals-4	F26F2.3.1	C17H1.5.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.485
F26F2.3	pals-5	F26F2.3.1	C17H1.6.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.911
F26F2.4	F26F2.1	F26F2.4b.1	F26F2.1.1	Uncharacterized protein.	Uncharacterized protein.	0.955
F26F2.4	F26F2.3	F26F2.4b.1	F26F2.3.1	Uncharacterized protein.	Uncharacterized protein.	0.985
F26F2.4	ZC196.3	F26F2.4b.1	ZC196.3a.1	Uncharacterized protein.	Uncharacterized protein.	0.758
F26F2.4	pals-22	F26F2.4b.1	C29F9.1.1	Uncharacterized protein.	Protein containing ALS2cr12 (ALS2CR12) signature.	0.700