STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C27F2.7Uncharacterized F-box protein C27F2.7. (408 aa)    
Predicted Functional Partners:
dss-1
Probable 26S proteasome complex subunit dss-1; Subunit of the 26S proteasome which plays a role in ubiquitin-dependent proteolysis. Has an essential role in oogenesis and larval growth. Required for intestinal function and default lifespan.
   
 
 0.911
K04G7.1
Integrase_H2C2 domain-containing protein.
   
 
 0.899
C03D6.1
Uncharacterized protein.
      
 0.892
hpo-10
Uncharacterized protein.
   
 
 0.854
R08D7.5
Uncharacterized calcium-binding protein R08D7.5.
   
 
 0.822
ekl-7
Uncharacterized protein.
   
  
 0.820
tag-115
Uncharacterized protein.
   
 
 0.792
F20D12.2
PCI domain-containing protein.
   
 
 0.782
tsr-1
Xpo1 domain-containing protein.
   
  
 0.749
sac-1
SAC domain-containing protein.
   
  
 0.675
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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