STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C30E1.4Uncharacterized protein. (290 aa)    
Predicted Functional Partners:
srr-7
Serpentine Receptor, class R.
   
   0.868
str-250
Seven TM Receptor.
   
    0.846
srd-45
Serpentine receptor class delta-45.
   
    0.846
T20B12.5
Uncharacterized protein T20B12.5.
   
    0.839
fbxb-51
FBA_2 domain-containing protein.
   
    0.796
pezo-1
Piezo-type mechanosensitive ion channel component.
   
  
 0.766
F11C1.4
Uncharacterized protein.
   
    0.764
mdt-22
Mediator of RNA polymerase II transcription subunit 22; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
   
 
 0.743
C04B4.6
Ubiquitin-like domain-containing protein.
   
    0.720
F59E12.8
Uncharacterized protein.
   
    0.720
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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