STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttr-9TransThyretin-Related family domain. (160 aa)    
Predicted Functional Partners:
F53B2.5
Uncharacterized protein.
   
   0.600
C34D4.2
Serine/threonine-protein phosphatase.
   
   0.586
decr-1.3
Probable 2,4-dienoyl-CoA reductase 3; Auxiliary enzyme of beta-oxidation. It participates in the metabolism of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3-enoyl-CoA. Belongs to the short-chain dehydrogenases/reductases (SDR) family. 2,4-dienoyl-CoA reductase subfamily.
   
   0.581
C15H7.3
Putative tyrosine-protein phosphatase C15H7.3.
   
   0.580
ZK484.7
Tyrosine-protein phosphatase.
   
   0.579
T27A3.5
Tyrosine-protein phosphatase.
   
   0.564
wht-5
ABC transporter domain-containing protein.
   
   0.560
K09G1.2
Uncharacterized protein.
   
    0.553
ZK1248.5
DUF1248 domain-containing protein.
   
    0.551
R13A1.3
BTB domain-containing protein.
   
    0.547
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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