STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhr-42Nuclear hormone receptor family member nhr-42; Orphan nuclear receptor; Belongs to the nuclear hormone receptor family. (356 aa)    
Predicted Functional Partners:
C27F2.1
WD Repeat protein.
      
 0.698
ptr-16
SSD domain-containing protein.
      
 0.662
ptr-3
SSD domain-containing protein.
      
 0.614
ceh-1
Homeobox protein ceh-1.
      
 0.585
ceh-38
Homeobox protein ceh-38; Probable DNA-binding regulatory protein involved in cell-fate specification.
      
 0.584
daf-14
MH2 domain-containing protein.
  
   0.574
nhr-102
Nuclear Hormone Receptor family.
  
 
0.550
F19F10.1
ETS domain-containing protein.
  
 
   0.549
ets-7
ETS domain-containing protein.
  
 
   0.549
ets-8
ETS domain-containing protein.
  
 
   0.547
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.