STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cup-16Uncharacterized protein. (392 aa)    
Predicted Functional Partners:
T07G12.5
Uncharacterized protein.
   
  
 0.822
C18E9.9
Uncharacterized protein.
   
  
 0.814
srh-60
Serpentine Receptor, class H.
    
 
 0.811
aexr-2
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.810
F18A1.1
Uncharacterized protein.
      
 0.810
F19B10.1
Uncharacterized protein.
      
 0.810
cup-14
RUN domain-containing protein.
      
 0.773
cpna-2
Copine family protein 2; Belongs to the copine family.
   
  
 0.699
cup-15
Coelomocyte uptake defective protein 15; Modulates the transport of substances from the endosomal to lysosomal compartments. Plays a role in lysosome formation and function in coelomocytes.
   
  
 0.699
clh-6
Chloride channel protein.
      
 0.669
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.