STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgp-2p-GlycoProtein related. (1296 aa)    
Predicted Functional Partners:
cdf-2
Cation Diffusion Facilitator family.
  
  
 0.783
glo-3
Gut granule loss protein 3.
   
  
 0.771
glo-1
Gut granule LOss.
   
  
 0.712
snpn-1
SNAPIN protein homolog; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in gut granule biogenesis. Belongs to the SNAPIN family.
      
 0.703
W09D10.4
Protein phosphatase; Belongs to the PP2C family.
   
  
 0.667
lmp-1
LAMP family protein lmp-1; Belongs to the LAMP family.
   
  
 0.666
D2045.7
Protein kinase domain-containing protein.
    
 
 0.664
avr-14
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.661
avr-15
Neur_chan_memb domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.660
pgp-10
p-GlycoProtein related.
  
 
0.631
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.