STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc-8Rab-GAP TBC domain-containing protein. (913 aa)    
Predicted Functional Partners:
ric-19
Resistance to inhibitors of cholinesterase protein 19; May be involved in a role in neurotransmitter secretion.
   
 
 0.867
rund-1
RUN domain-containing protein.
    
 
 0.864
cccp-1
CARD domain-containing protein.
   
  
 0.862
tbc-12
Rab-GAP TBC domain-containing protein.
   
  
 0.768
tbc-1
TBC (Tre-2/Bub2/Cdc16) domain family.
      
 0.758
rab-7
RAB family.
    
 
 0.742
tbc-11
Rab-GAP TBC domain-containing protein.
   
  
 0.700
nlp-21
Neuropeptide-Like Protein.
   
  
 0.697
tbc-13
Rab-GAP TBC domain-containing protein.
      
 0.691
tbc-18
TBC (Tre-2/Bub2/Cdc16) domain family.
   
  
 0.670
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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