STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-180Col_cuticle_N domain-containing protein. (300 aa)    
Predicted Functional Partners:
col-145
Putative cuticle collagen 145; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity).
  
   
0.999
col-106
Col_cuticle_N domain-containing protein.
  
 
 
 0.805
nspb-10
Nematode Specific Peptide family, group B.
   
  
 0.720
nspe-7
Nematode Specific Peptide family, group E.
      
 0.697
nspe-5
Nematode Specific Peptide family, group E.
      
 0.660
col-91
Putative cuticle collagen 91; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity).
  
  
0.651
col-156
Col_cuticle_N domain-containing protein.
  
   
0.645
col-125
Col_cuticle_N domain-containing protein.
  
   
0.642
abu-10
Activated in Blocked Unfolded protein response.
   
 
 0.635
col-51
Col_cuticle_N domain-containing protein.
   
  
 0.634
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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