STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C45G9.2Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the Dus family. (284 aa)    
Predicted Functional Partners:
T04F8.2
GpcrRhopsn4 domain-containing protein.
 
      0.800
Y71F9AL.1
UPF0020 domain-containing protein.
   
  
 0.687
F52C12.2
Probable ribosome biogenesis protein CELE_F52C12.2; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.654
W02A11.1
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.609
F25H8.1
SAM-dependent MTase TRM10-type domain-containing protein.
   
  
 0.590
cogc-5
Conserved Oligomeric Golgi (COG) Component.
   
  
 0.561
tag-124
Probable tRNA pseudouridine synthase tag-124; Formation of pseudouridine at position 38 and 39 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
 
 0.553
W02B12.10
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
  
 
 0.551
Y54E5B.2
WD_REPEATS_REGION domain-containing protein.
   
 
 0.538
F25H8.2
Uncharacterized protein.
   
    0.535
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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