STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C48B4.8Uncharacterized protein C48B4.8. (196 aa)    
Predicted Functional Partners:
Y111B2A.1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
  
 0.873
K08E4.2
GLTP domain-containing protein.
   
  
 0.872
F58F9.3
Uncharacterized protein.
      
 0.868
W08E12.8
Uncharacterized protein.
      
 0.868
pqn-98
DUF148 domain-containing protein.
      
 0.868
C04G2.9
Uncharacterized protein.
      
 0.852
clec-169
C-type lectin domain-containing protein.
      
 0.816
ttr-44
TransThyretin-Related family domain.
      
 0.810
C40H1.8
Lipase_3 domain-containing protein.
      
 0.807
ugt-36
UDP-GlucuronosylTransferase.
      
 0.807
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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