lpd-2 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

lpd-2

LiPid Depleted. (318 aa)

Predicted Functional Partners:

B0280.9

0.999

nol-10

0.999

F55F8.3

0.998

T10B5.3

0.998

T20B12.3

0.998

krr-1

0.997

C16C10.2

0.997

F27C1.6

0.997

wdr-46

0.997

Y61A9LA.10

0.997

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0280.9	C16C10.2	B0280.9.1	C16C10.2.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.995
B0280.9	F27C1.6	B0280.9.1	F27C1.6.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	Uncharacterized protein.	0.997
B0280.9	F55F8.3	B0280.9.1	F55F8.3.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	Periodic tryptophan protein 2 homolog; Belongs to the WD repeat PWP2 family.	0.999
B0280.9	T10B5.3	B0280.9.1	T10B5.3a.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	Utp12 domain-containing protein.	0.998
B0280.9	T20B12.3	B0280.9.1	T20B12.3.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	Uncharacterized protein T20B12.3; Belongs to the CBF/MAK21 family.	0.997
B0280.9	Y61A9LA.10	B0280.9.1	Y61A9LA.10.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	Bms1-type G domain-containing protein.	0.998
B0280.9	krr-1	B0280.9.1	C05C8.2.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
B0280.9	lpd-2	B0280.9.1	C48E7.3.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	LiPid Depleted.	0.999
B0280.9	nol-10	B0280.9.1	F32E10.1.1	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	NUC153 domain-containing protein.	0.994
B0280.9	wdr-46	B0280.9.1	F28D1.1.2	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	WD_REPEATS_REGION domain-containing protein.	0.997
C16C10.2	B0280.9	C16C10.2.1	B0280.9.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.	0.995
C16C10.2	F27C1.6	C16C10.2.1	F27C1.6.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.992
C16C10.2	F55F8.3	C16C10.2.1	F55F8.3.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Periodic tryptophan protein 2 homolog; Belongs to the WD repeat PWP2 family.	0.996
C16C10.2	T10B5.3	C16C10.2.1	T10B5.3a.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Utp12 domain-containing protein.	0.974
C16C10.2	T20B12.3	C16C10.2.1	T20B12.3.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein T20B12.3; Belongs to the CBF/MAK21 family.	0.995
C16C10.2	Y61A9LA.10	C16C10.2.1	Y61A9LA.10.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Bms1-type G domain-containing protein.	0.995
C16C10.2	krr-1	C16C10.2.1	C05C8.2.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
C16C10.2	lpd-2	C16C10.2.1	C48E7.3.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	LiPid Depleted.	0.997
C16C10.2	nol-10	C16C10.2.1	F32E10.1.1	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	NUC153 domain-containing protein.	0.993
C16C10.2	wdr-46	C16C10.2.1	F28D1.1.2	Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.998