STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C49F5.3Uncharacterized protein. (258 aa)    
Predicted Functional Partners:
C49F5.6
Uncharacterized protein.
   
  
 0.911
C49F5.5
TAZ-type domain-containing protein.
    
 
 0.903
pzf-1
Paired Zinc Finger protein.
   
 
 0.899
C49F5.7
Uncharacterized protein.
   
  
 0.893
C17H11.2
Uncharacterized protein.
   
 
 0.875
F16B12.6
Uncharacterized protein.
   
  
 0.853
cpg-3
Chondroitin proteoglycan 3.
   
 
 0.849
ent-5
Equilibrative Nucleoside Transporter.
   
  
 0.758
sea-1
T-box transcription factor 18; Probable transcriptional regulator involved in developmental processes. Activates xol-1 transcription, either directly or indirectly, establishing that xol-1 acts as the master regulator to integrate both X chromosome and autosomal signals to determine sexual fate.
   
  
 0.758
chtl-1
Choline transporter-like protein 1; Belongs to the CTL (choline transporter-like) family.
   
  
 0.717
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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