STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C49H3.3Uncharacterized protein. (109 aa)    
Predicted Functional Partners:
rpl-30
Ribosomal_L7Ae domain-containing protein.
   
   0.782
nol-16
Nucleolar protein 16.
   
    0.753
rpac-19
Probable DNA-directed RNA polymerases I and III subunit RPAC2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common core component of RNA polymerases I and III which synthesize ribosomal RNA precursors and small RNAs, such as 5S rRNA and tRNAs, respectively (By similarity).
   
    0.684
Y48A6B.3
Putative H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).
   
   0.683
Y56A3A.18
Zinc finger protein 593 homolog; Belongs to the ZNF593/BUD20 C2H2-type zinc-finger protein family.
   
 
 0.680
ZK1127.4
Protein BCCIP homolog; Belongs to the BCP1 family.
   
    0.655
F10E9.11
Uncharacterized protein.
   
    0.648
rpl-14
Ribosomal_L14e domain-containing protein.
   
   0.646
rpl-43
60S ribosomal protein L37a; Belongs to the eukaryotic ribosomal protein eL43 family.
   
   0.640
ZK686.1
Uncharacterized protein ZK686.1.
   
   0.638
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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