STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C50C3.2Uncharacterized protein C50C3.2; Belongs to the spectrin family. (2236 aa)    
Predicted Functional Partners:
Y59C2A.2
Uncharacterized protein.
      
 0.971
unc-70
Spectrin beta chain; Belongs to the spectrin family.
   
0.825
sma-1
SMAll.
   
 0.825
spc-1
SPeCtrin.
     
 
0.800
F01G10.5
Uncharacterized protein.
   
   0.623
W03F11.4
Protein-tyrosine-phosphatase.
   
   0.593
Y113G7C.1
Protein-tyrosine-phosphatase.
   
   0.593
H20J04.1
WSN domain-containing protein.
   
    0.592
alg-4
Putative protein tag-76.
   
   0.557
wago-10
Piwi-like protein; Belongs to the argonaute family.
   
   0.553
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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