STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C52B9.4Uncharacterized protein. (558 aa)    
Predicted Functional Partners:
C34D4.4
Uncharacterized Golgi apparatus membrane protein-like protein C34D4.4.
   
  
 0.853
T28D9.1
Uncharacterized protein T28D9.1.
      
 0.850
soap-1
Sorting Of Apical Proteins.
   
  
 0.811
F27D9.2
MFS domain-containing protein.
   
  
 0.810
vps-8
Vps8 domain-containing protein.
   
  
 0.706
nhr-71
Nuclear hormone receptor family member nhr-71; Orphan nuclear receptor.
      
 0.694
ifc-2
Intermediate filament protein ifc-2; Cytoplasmic intermediate filaments provide mechanical strength to cells. Not essential protein, although its absence leads to mild defects in locomotion.
      
 0.660
zhit-1
HIT-type domain-containing protein.
      
 0.540
F35G12.7
Uncharacterized protein.
      
 0.536
mel-11
ANK_REP_REGION domain-containing protein.
    
 
 0.469
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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