STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C54D10.3Uncharacterized protein. (172 aa)    
Predicted Functional Partners:
rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.808
C49G7.3
Uncharacterized protein.
   
   0.637
F15A4.6
Uncharacterized protein.
   
   
0.596
kynu-1
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.
    
   0.564
fip-2
Fungus-Induced Protein.
   
    0.545
phat-6
PHAryngeal gland Toxin-related.
   
    0.538
rps-22
Ribosomal Protein, Small subunit; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.510
rps-28
40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family.
   
   0.467
rps-14
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.463
rps-15
40S ribosomal protein S15; Negatively regulates lifespan.
   
   0.459
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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