STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhr-171Nuclear Hormone Receptor family. (386 aa)    
Predicted Functional Partners:
ceh-27
Homeobox domain-containing protein.
    
 
 0.742
tlp-1
C2H2-type domain-containing protein.
      
 0.697
F21D5.9
C2H2-type domain-containing protein.
   
 
 0.634
ceh-32
Homeobox protein ceh-32; Plays a role in head morphogenesis, expression is regulated by vab-3.
  
   
 0.566
ceh-6
Homeobox protein ceh-6; Vital for embryonic development and essential for the proper function of the excretory cell. Required for the transdifferentiation of the Y rectal epithelial cell to the PDA motor neuron during larval development.
  
 
 
 0.563
F19F10.1
ETS domain-containing protein.
  
 
   0.547
ets-7
ETS domain-containing protein.
  
 
   0.546
ets-8
ETS domain-containing protein.
  
 
   0.543
daf-14
MH2 domain-containing protein.
  
 
   0.540
daf-8
Dwarfin sma.
  
 
   0.537
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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