STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spp-17Saposin B-type domain-containing protein. (104 aa)    
Predicted Functional Partners:
ilys-5
Invertebrate LYSozyme.
   
  
 0.763
C17D12.3
Uncharacterized protein.
      
 0.758
Y38E10A.14
Uncharacterized protein.
      
 0.758
Y47H9A.1
annotation not available
      
 0.758
spp-4
Saposin B-type domain-containing protein.
   
  
 0.728
scl-6
SCP domain-containing protein; Belongs to the CRISP family.
   
  
 0.705
clec-75
C-type lectin domain-containing protein.
      
 0.698
nhr-244
NR LBD domain-containing protein.
      
 0.698
clec-68
C-type lectin domain-containing protein.
      
 0.693
oac-20
NRF domain-containing protein.
   
  
 0.679
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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