STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tag-294RanBP2-type domain-containing protein. (430 aa)    
Predicted Functional Partners:
spat-3
RING-type domain-containing protein.
   
 
 0.951
mig-32
RING-type domain-containing protein.
   
 
 0.753
F46H5.2
Uncharacterized protein.
   
  
 0.723
C55B6.1
FGGY_C domain-containing protein.
   
 
 0.717
lron-7
LRRCT domain-containing protein.
    
 
 0.700
ZK1073.1
Uncharacterized protein ZK1073.1; Belongs to the NDRG family.
      
 0.698
ZK867.2
Lig_chan-Glu_bd domain-containing protein.
      
 0.698
spp-22
SaPosin-like Protein family.
      
 0.698
ztf-22
Zinc finger putative Transcription Factor family.
      
 0.667
agmo-1
Alkylglycerol monooxygenase; Glyceryl-ether monooxygenase that cleaves the O-alkyl bond of ether lipids; Belongs to the sterol desaturase family. TMEM195 subfamily.
      
 0.662
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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