C56A3.5 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

C56A3.5

Uncharacterized protein. (378 aa)

Predicted Functional Partners:

W02B12.10

0.530

D2030.3

0.471

JC8.2

0.424

C03H5.3

0.412

dph-1

0.408

F10E7.5

0.400

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C03H5.3	C56A3.5	C03H5.3a.1	C56A3.5.2	Uncharacterized protein.	Uncharacterized protein.	0.412
C03H5.3	F10E7.5	C03H5.3a.1	F10E7.5.1	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.446
C56A3.5	C03H5.3	C56A3.5.2	C03H5.3a.1	Uncharacterized protein.	Uncharacterized protein.	0.412
C56A3.5	D2030.3	C56A3.5.2	D2030.3.2	Uncharacterized protein.	Uncharacterized protein.	0.471
C56A3.5	F10E7.5	C56A3.5.2	F10E7.5.1	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.400
C56A3.5	JC8.2	C56A3.5.2	JC8.2.2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.424
C56A3.5	W02B12.10	C56A3.5.2	W02B12.10.1	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.530
C56A3.5	dph-1	C56A3.5.2	C14B1.5.1	Uncharacterized protein.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	0.408
D2030.3	C56A3.5	D2030.3.2	C56A3.5.2	Uncharacterized protein.	Uncharacterized protein.	0.471
D2030.3	W02B12.10	D2030.3.2	W02B12.10.1	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.463
F10E7.5	C03H5.3	F10E7.5.1	C03H5.3a.1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.446
F10E7.5	C56A3.5	F10E7.5.1	C56A3.5.2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.400
F10E7.5	JC8.2	F10E7.5.1	JC8.2.2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	WD_REPEATS_REGION domain-containing protein.	0.861
F10E7.5	W02B12.10	F10E7.5.1	W02B12.10.1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.654
F10E7.5	dph-1	F10E7.5.1	C14B1.5.1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	0.486
JC8.2	C56A3.5	JC8.2.2	C56A3.5.2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.424
JC8.2	F10E7.5	JC8.2.2	F10E7.5.1	WD_REPEATS_REGION domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.861
JC8.2	W02B12.10	JC8.2.2	W02B12.10.1	WD_REPEATS_REGION domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.412
JC8.2	dph-1	JC8.2.2	C14B1.5.1	WD_REPEATS_REGION domain-containing protein.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	0.496
W02B12.10	C56A3.5	W02B12.10.1	C56A3.5.2	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.530