STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abch-1ABC transporter domain-containing protein. (595 aa)    
Predicted Functional Partners:
utp-20
DRIM domain-containing protein.
   
  
 0.851
T28D9.1
Uncharacterized protein T28D9.1.
      
 0.808
del-10
Degenerin-like protein del-10.
      
 0.657
abcf-2
ABC transporter, class F.
     
 0.651
dgk-5
Putative diacylglycerol kinase K06A1.6.
   
  
 0.594
wht-1
ABC transporter ATP-binding protein/permease wht-1; Belongs to the ABC transporter superfamily. ABCG family. Eye pigment precursor importer (TC 3.A.1.204) subfamily.
   
 
0.590
wht-2
ABC transporter domain-containing protein.
   
 
0.590
wht-3
ABC transporter ATP-binding protein/permease wht-3; Required for efficient RNA interference (RNAi) of pop-1 indicating a role in the germline development. Belongs to the ABC transporter superfamily. ABCG family. Eye pigment precursor importer (TC 3.A.1.204) subfamily.
   
 
0.590
wht-4
ABC transporter domain-containing protein.
   
 
0.590
wht-5
ABC transporter domain-containing protein.
   
 
0.590
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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