STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqn-24Prion-like-(Q/N-rich)-domain-bearing protein. (277 aa)    
Predicted Functional Partners:
rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.999
rla-1
60S acidic ribosomal protein P1; Plays an important role in the elongation step of protein synthesis; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 
 0.977
rla-0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 
 0.976
rps-15
40S ribosomal protein S15; Negatively regulates lifespan.
   
 
 0.967
rps-19
40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family.
   
 
 0.967
rpl-2
60S ribosomal protein L8.
   
 
 0.966
rps-11
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.966
rpl-38
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 
 0.965
rpl-23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.964
rps-16
40S ribosomal protein S16.
   
 
 0.964
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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