STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D2005.1A to I editase domain-containing protein. (323 aa)    
Predicted Functional Partners:
T03G11.3
Zinc finger C2HC domain-containing protein T03G11.3; Belongs to the ZC2HC1 family.
      
 0.758
Y82E9BR.19
F-box domain-containing protein.
      
 0.758
R11H6.5
Uncharacterized protein.
    
 
 0.710
cdl-1
Histone RNA hairpin-binding protein; Involved in histone pre-mRNA 3' processing. Required for chromosome condensation, progression of cell death and morphogenesis.
   
  
 0.706
rop-1
60 kDa SS-A/Ro ribonucleoprotein homolog; RNA-binding protein that binds to a single small cytoplasmic RNA molecule known as Y RNA. May stabilize this RNA from degradation; Belongs to the Ro 60 kDa family.
      
 0.702
C11D2.7
PUA domain-containing protein.
      
 0.700
C15C6.4
Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.
      
 0.700
Y60A9.3
Uncharacterized protein.
      
 0.697
C48B6.2
Putative 40S ribosomal protein S4-like.
   
  
 0.695
larp-5
HTH La-type RNA-binding domain-containing protein.
      
 0.695
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.