STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grd-12Ground-like domain-containing protein. (285 aa)    
Predicted Functional Partners:
srab-6
Serpentine Receptor, class AB (Class A-like).
      
 0.807
wrt-9
WaRThog (Hedgehog-like family).
   
  
 0.801
grl-15
Ground-like domain-containing protein.
   
  
 0.801
grd-14
GRounDhog (Hedgehog-like family).
   
  
 0.767
grl-5
Ground-like domain-containing protein.
   
  
 0.764
grd-5
Ground-like domain-containing protein.
   
  
 0.762
ptr-1
SSD domain-containing protein.
   
  
 0.735
grl-7
Ground-like domain-containing protein.
   
  
 0.733
grd-1
GRounDhog (Hedgehog-like family).
   
  
 0.728
grd-2
GRounDhog (Hedgehog-like family).
   
  
 0.722
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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