F07G6.3 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F07G6.3

annotation not available (430 aa)

Predicted Functional Partners:

fbxa-160

0.449

srj-42

0.420

R10D12.15

0.406

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F07G6.3	R10D12.15	F07G6.3.1	R10D12.15b.1	annotation not available	Uncharacterized protein.	0.406
F07G6.3	fbxa-160	F07G6.3.1	C08E3.12.1	annotation not available	FTH domain-containing protein.	0.449
F07G6.3	srj-42	F07G6.3.1	Y73F8A.3.1	annotation not available	Serpentine Receptor, class J.	0.420
R10D12.15	F07G6.3	R10D12.15b.1	F07G6.3.1	Uncharacterized protein.	annotation not available	0.406
R10D12.15	fbxa-160	R10D12.15b.1	C08E3.12.1	Uncharacterized protein.	FTH domain-containing protein.	0.444
fbxa-160	F07G6.3	C08E3.12.1	F07G6.3.1	FTH domain-containing protein.	annotation not available	0.449
fbxa-160	R10D12.15	C08E3.12.1	R10D12.15b.1	FTH domain-containing protein.	Uncharacterized protein.	0.444
fbxa-160	srj-42	C08E3.12.1	Y73F8A.3.1	FTH domain-containing protein.	Serpentine Receptor, class J.	0.515
srj-42	F07G6.3	Y73F8A.3.1	F07G6.3.1	Serpentine Receptor, class J.	annotation not available	0.420
srj-42	fbxa-160	Y73F8A.3.1	C08E3.12.1	Serpentine Receptor, class J.	FTH domain-containing protein.	0.515