STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdz-9SKN-1 Dependent Zygotic transcript. (353 aa)    
Predicted Functional Partners:
sdz-30
SKN-1 Dependent Zygotic transcript.
   
    0.677
vet-6
Very Early Transcript.
   
    0.604
R02C2.1
Protein kinase domain-containing protein.
   
    0.593
btb-8
BTB domain-containing protein.
   
    0.592
sepa-1
Protein sepa-1; Adapter protein that connects P-granules in somatic cells with the autophagic machinery. Association with other adapters such as epg-2 and P-granule components such as pgl-3 is required for the accumulation and degradation of P-granules by autophagy in somatic cells. This ensures exclusive localization of the P-granules in germ cells.
   
    0.592
fbxb-2
F-box domain-containing protein.
   
   
0.587
fbxb-74
F-box domain-containing protein.
   
   
0.584
fbxb-40
FBA_2 domain-containing protein.
   
   
0.580
F38C2.7
Uncharacterized protein.
   
    0.576
H24K24.2
Uncharacterized protein.
   
    0.570
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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