STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F08F3.4Epimerase domain-containing protein. (358 aa)    
Predicted Functional Partners:
T25B9.1
Aminotran_1_2 domain-containing protein.
  
 
 0.996
K01C8.1
ACT domain-containing protein.
   
 
 0.939
R102.4
Uncharacterized protein R102.4; Belongs to the threonine aldolase family.
  
 
 0.930
C42D4.3
DB domain-containing protein.
   
  
 0.919
Y51H7C.9
ACT domain-containing protein.
     
 0.913
C30B5.6
Uncharacterized protein.
      
 0.912
rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.894
ttr-15
Transthyretin-like protein 15.
   
  
 0.861
pks-1
PolyKetide Synthase.
  
 0.801
ivd-1
Isovaleryl-CoA dehydrogenase.
   
 
 0.780
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.