STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F10B5.3BTB domain-containing protein. (471 aa)    
Predicted Functional Partners:
C30E1.4
Uncharacterized protein.
   
   0.559
nhr-54
Nuclear hormone receptor family member nhr-54; Orphan nuclear receptor; Belongs to the nuclear hormone receptor family.
   
   0.551
Y9C9A.1
Uncharacterized protein.
   
   0.550
sre-22
Serpentine Receptor, class E (Epsilon).
   
    0.538
mrpl-2
Ribosomal_L2_C domain-containing protein.
   
 
 0.531
crn-7
Cell-death-related nuclease 7; Belongs to the DNase II family.
   
    0.528
dli-1
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
   
   0.521
C29F5.3
RNase_Zc3h12a domain-containing protein.
   
    0.515
his-73
Histone domain-containing protein.
   
   0.514
srr-7
Serpentine Receptor, class R.
   
   0.500
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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