STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abt-2ABC Transporter family. (2146 aa)    
Predicted Functional Partners:
pmp-5
ABC transmembrane type-1 domain-containing protein.
      
 0.684
dct-8
DAF-16/FOXO Controlled, germline Tumor affecting.
      
 0.614
C06G4.4
Uncharacterized protein C06G4.4.
      
 0.532
Y55F3AM.14
Uncharacterized protein.
    
 
 0.491
pgp-9
p-GlycoProtein related.
  
 
0.465
mrp-6
Uncharacterized protein.
  
 
0.465
cox-15
Cytochrome OXidase assembly protein.
    
 0.461
pmp-4
Peroxisomal Membrane Protein related.
   
  
 0.440
T04A8.7
Aamy domain-containing protein.
   
 
  0.433
gcy-15
Receptor-type guanylate cyclase gcy-15; Guanylate cyclase involved in the production of the second messenger cGMP (By similarity).
  
 
 0.433
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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