STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyp-13A11CYtochrome P450 family; Belongs to the cytochrome P450 family. (517 aa)    
Predicted Functional Partners:
pks-1
PolyKetide Synthase.
  
 0.822
F56A4.4
GST N-terminal domain-containing protein.
      
 0.802
klf-1
Kruppel-Like Factor (Zinc finger protein).
   
 
 0.560
W09D6.1
AMP-binding domain-containing protein.
  
 0.524
F37C12.3
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.517
Y56A3A.19
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.517
nrps-1
NonRibosomal Peptide Synthetase.
  
 0.511
cyp-14A4
CYtochrome P450 family; Belongs to the cytochrome P450 family.
  
 
0.510
cyp-35B2
CYtochrome P450 family; Belongs to the cytochrome P450 family.
  
 
0.505
cyp-33C2
CYtochrome P450 family; Belongs to the cytochrome P450 family.
  
 
0.482
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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