STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
far-4Fatty Acid/Retinol binding protein. (205 aa)    
Predicted Functional Partners:
F07B7.8
DUF19 domain-containing protein.
      
 0.805
H39E23.3
Uncharacterized protein.
   
 
 0.730
cnc-6
CaeNaCin (Caenorhabditis bacteriocin).
   
  
 0.709
fip-1
Fungus-induced protein 1.
   
  
 0.706
ZK970.7
DUF148 domain-containing protein.
   
  
 0.700
fipr-26
FIP (Fungus-Induced Protein) Related.
      
 0.695
cnc-7
CaeNaCin (Caenorhabditis bacteriocin).
   
  
 0.563
fip-5
Fungus-Induced Protein.
   
  
 0.537
cnc-4
CaeNaCin (Caenorhabditis bacteriocin).
      
 0.430
C33A12.1
Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).
   
 
 0.420
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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