STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhr-178Nuclear Hormone Receptor family. (421 aa)    
Predicted Functional Partners:
Y47G6A.5
Tyrosine-protein kinase.
    
 
 0.680
F26A10.2
Uncharacterized protein.
    
 
 0.669
C18H7.11
Uncharacterized protein.
      
 0.660
C18H9.1
Uncharacterized protein.
      
 0.660
clec-42
C-type LECtin.
      
 0.660
F45E10.2
MFS domain-containing protein.
      
 0.660
sru-12
Serpentine Receptor, class U.
      
 0.660
K03H1.5
Uncharacterized protein K03H1.5.
   
  
 0.640
M28.8
Uncharacterized protein.
      
 0.618
swt-6
Sugar transporter SWEET; Mediates sugar transport across membranes. Belongs to the SWEET sugar transporter family.
      
 0.612
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.