STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-89Col_cuticle_N domain-containing protein. (296 aa)    
Predicted Functional Partners:
col-182
COLlagen.
 
 
  
 0.840
col-120
Col_cuticle_N domain-containing protein.
   
  
 0.723
T19B10.2
Uncharacterized protein.
   
  
 0.706
col-44
Col_cuticle_N domain-containing protein.
   
  
 0.686
col-72
COLlagen.
   
  
 0.683
dpy-31
Zinc metalloproteinase dpy-31; Metalloprotease which cleaves the carboxyl terminus of procollagens, such as sqt-3, to mature collagens (By similarity). Involved in cuticular collagen maturation.
    
 
 0.550
col-113
Col_cuticle_N domain-containing protein.
   
  
0.428
col-174
Col_cuticle_N domain-containing protein.
   
  
0.418
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.