STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgc-31Neur_chan_memb domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (675 aa)    
Predicted Functional Partners:
B0334.6
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
      
 0.809
srz-78
Serpentine Receptor, class Z.
      
 0.809
str-131
Seven TM Receptor.
      
 0.809
lgc-21
Neur_chan_LBD domain-containing protein.
      
 0.809
F23F1.2
Uncharacterized protein.
      
 0.809
str-146
Seven TM Receptor.
      
 0.809
H10E21.4
Uncharacterized protein.
      
 0.809
Y70D2A.1
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.809
Y12A6A.1
Uncharacterized protein.
      
 0.807
dpf-6
Dipeptidyl peptidase family member 6; Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration.
      
 0.697
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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