STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thn-1THaumatiN family. (233 aa)    
Predicted Functional Partners:
thn-2
THaumatiN family.
  
  
0.999
chil-25
Glyco_18 domain-containing protein.
    
 
 0.819
clec-166
C-type lectin domain-containing protein.
      
 0.809
cyp-13A4
Putative cytochrome P450 CYP13A4; Cytochromes P450 are a group of heme-thiolate monooxygenases. They oxidize a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics.
   
 
 0.784
dod-6
ShKT domain-containing protein.
      
 0.700
cnc-7
CaeNaCin (Caenorhabditis bacteriocin).
   
  
 0.699
fipr-23
FIP (Fungus-Induced Protein) Related.
      
 0.697
fipr-22
FIP (Fungus-Induced Protein) Related.
      
 0.693
abf-2
Antibacterial factor-related peptide 2; Exhibits antimicrobial activity against the Gram-positive bacteria B.subtilis IFO 3134, K.varians MAFF 118076 and S.aureus ATCC 6538P, the Gram-negative bacteria A.tumefaciens MAFF 1001, B.bacteriovorus MAFF 106101 and K.pneumoniae MAFF 519002, and the yeasts C.krusei MAFF 114085, K.thermotolerans MAFF 113848 and T.delbrueckii MAFF 113811.
   
  
 0.671
ugt-51
UDP-GlucuronosylTransferase.
      
 0.660
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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