gras-1 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

gras-1

PDZ domain-containing protein. (245 aa)

Predicted Functional Partners:

T01C3.3

0.865

C06A5.8

0.858

gipc-2

0.817

Y54E5A.7

0.813

smz-2

0.811

smz-1

0.810

gipc-1

0.756

aipr-1

0.731

ubc-6

0.705

pxf-1

0.700

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C06A5.8	T01C3.3	C06A5.8a.2	T01C3.3.1	RING-type domain-containing protein.	RING-type domain-containing protein.	0.912
C06A5.8	Y54E5A.7	C06A5.8a.2	Y54E5A.7a.1	RING-type domain-containing protein.	Uncharacterized protein.	0.826
C06A5.8	aipr-1	C06A5.8a.2	C56C10.10.1	RING-type domain-containing protein.	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	0.714
C06A5.8	gras-1	C06A5.8a.2	F30F8.3.1	RING-type domain-containing protein.	PDZ domain-containing protein.	0.858
C06A5.8	ubc-6	C06A5.8a.2	D1022.1a.1	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.745
T01C3.3	C06A5.8	T01C3.3.1	C06A5.8a.2	RING-type domain-containing protein.	RING-type domain-containing protein.	0.912
T01C3.3	Y54E5A.7	T01C3.3.1	Y54E5A.7a.1	RING-type domain-containing protein.	Uncharacterized protein.	0.817
T01C3.3	aipr-1	T01C3.3.1	C56C10.10.1	RING-type domain-containing protein.	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	0.722
T01C3.3	gras-1	T01C3.3.1	F30F8.3.1	RING-type domain-containing protein.	PDZ domain-containing protein.	0.865
T01C3.3	ubc-6	T01C3.3.1	D1022.1a.1	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.734
Y54E5A.7	C06A5.8	Y54E5A.7a.1	C06A5.8a.2	Uncharacterized protein.	RING-type domain-containing protein.	0.826
Y54E5A.7	T01C3.3	Y54E5A.7a.1	T01C3.3.1	Uncharacterized protein.	RING-type domain-containing protein.	0.817
Y54E5A.7	aipr-1	Y54E5A.7a.1	C56C10.10.1	Uncharacterized protein.	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	0.704
Y54E5A.7	gras-1	Y54E5A.7a.1	F30F8.3.1	Uncharacterized protein.	PDZ domain-containing protein.	0.813
Y54E5A.7	ubc-6	Y54E5A.7a.1	D1022.1a.1	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.712
aipr-1	C06A5.8	C56C10.10.1	C06A5.8a.2	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	RING-type domain-containing protein.	0.714
aipr-1	T01C3.3	C56C10.10.1	T01C3.3.1	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	RING-type domain-containing protein.	0.722
aipr-1	Y54E5A.7	C56C10.10.1	Y54E5A.7a.1	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	Uncharacterized protein.	0.704
aipr-1	gras-1	C56C10.10.1	F30F8.3.1	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	PDZ domain-containing protein.	0.731
aipr-1	ubc-6	C56C10.10.1	D1022.1a.1	Aryl hydrocarbon receptor Interacting Protein (AIP) Related.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.466