STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdz-16SKN-1 Dependent Zygotic transcript. (344 aa)    
Predicted Functional Partners:
sdz-30
SKN-1 Dependent Zygotic transcript.
   
   0.540
sdz-9
SKN-1 Dependent Zygotic transcript.
   
    0.525
ZC239.20
Uncharacterized protein.
   
    0.487
Y46G5A.28
Uncharacterized protein.
   
    0.449
C05D12.5
Uncharacterized protein.
   
    0.439
T26E3.8
F-box domain-containing protein.
   
    0.429
fbxb-57
F-box domain-containing protein.
   
    0.426
Y38E10A.3
Uncharacterized protein.
   
    0.418
fbxc-38
F-box C protein 38.
   
    0.408
fbxb-2
F-box domain-containing protein.
   
    0.403
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.