STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clec-180C-type lectin domain-containing protein 180. (896 aa)    
Predicted Functional Partners:
clec-78
C-type LECtin.
   
 
 0.926
lmd-4
LysM Domain (Peptidoglycan binding) protein.
      
 0.896
clec-1
C-type lectin domain-containing protein.
      
 0.891
lmd-5
LysM Domain (Peptidoglycan binding) protein.
   
  
 0.852
mlt-9
Uncharacterized protein.
   
    0.846
H03E18.1
Uncharacterized protein.
   
    0.846
qua-1
Protein qua-1; Required for cuticle shedding and normal alae morphology and localization, and subsequently larval development.
   
    0.846
H42K12.3
Uncharacterized protein.
   
   0.619
sups-1
SUppressor of Pkc-3 (Pkc-3) Sterility.
   
    0.615
F23H12.5
Uncharacterized protein.
   
    0.607
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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