STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atrn-1Putative protein tag-53. (1269 aa)    
Predicted Functional Partners:
F40E10.6
Uncharacterized protein.
   
  
 0.909
ham-2
Uncharacterized protein.
      
 0.810
pha-2
Homeobox domain-containing protein.
      
 0.758
C11H1.3
RING-type domain-containing protein.
   
 
 0.737
coel-1
Tubulin folding COfactor E-Like protein.
      
 0.727
F02A9.1
Uncharacterized protein F02A9.1.
      
 0.698
zig-6
Zwei Ig domain protein zig-6; Probably not involved in maintaining the position of ASI and ASH head neuron cell bodies and ventral nerve cord axons of PVQ, PVP, RMEV, AVK and HSN neurons.
      
 0.693
zig-4
Zwei Ig domain protein zig-4; Required for maintaining axon position of PVQ and PVP neurons postembryonically in the ventral nerve cord (VNC) by preventing axons drifting into the opposite side of the VNC that could occur during body growth and movement.
      
 0.671
bcs-1
BCS1 (Mitochondrial chaperone) homolog; Belongs to the AAA ATPase family.
      
 0.667
wrk-1
Wrapper/Rega-1/Klingon homolog.
   
  
 0.643
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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