STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bigr-1Uncharacterized protein. (226 aa)    
Predicted Functional Partners:
ZK1320.5
Uncharacterized protein ZK1320.5.
      
 0.891
Y44A6C.1
Uncharacterized protein.
   
  
 0.815
F44G4.7
Uncharacterized protein.
      
 0.810
K01A11.3
Uncharacterized protein.
      
 0.810
T16H12.2
Uncharacterized protein T16H12.2.
      
 0.810
Y25C1A.13
Uncharacterized protein.
   
  
 0.783
F26H9.5
Probable phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
 
 0.753
mel-32
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family.
    
 0.720
ndx-9
NADH pyrophosphatase; Belongs to the Nudix hydrolase family. NudC subfamily.
   
 
 0.713
F45E10.2
MFS domain-containing protein.
      
 0.700
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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