Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F39F10.5 | Y73B3A.8 | F39F10.5.1 | Y73B3A.8.1 | Uncharacterized protein. | annotation not available | 0.555 |
F39F10.5 | mdt-17 | F39F10.5.1 | Y113G7B.18b.1 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). | 0.523 |
F39F10.5 | rpb-12 | F39F10.5.1 | F23B2.13a.1 | Uncharacterized protein. | RNA Polymerase II (B) subunit. | 0.524 |
F39F10.5 | rpb-2 | F39F10.5.1 | C26E6.4.1 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit RPB2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is [...] | 0.549 |
F39F10.5 | rpb-3 | F39F10.5.1 | C36B1.3.1 | Uncharacterized protein. | RPOLD domain-containing protein. | 0.523 |
F39F10.5 | rpb-4 | F39F10.5.1 | F43E2.2.1 | Uncharacterized protein. | RPOL4c domain-containing protein. | 0.523 |
F39F10.5 | rpb-5 | F39F10.5.1 | H27M09.2.1 | Uncharacterized protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB5 is part of the lower [...] | 0.524 |
F39F10.5 | rpb-6 | F39F10.5.1 | C06A1.5.1 | Uncharacterized protein. | Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2; DNA-dependent RNA polymerases catalyze the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB6 is part of t [...] | 0.524 |
F39F10.5 | rpb-7 | F39F10.5.1 | Y54E10BR.6.1 | Uncharacterized protein. | S1 motif domain-containing protein. | 0.527 |
F39F10.5 | spt-5 | F39F10.5.1 | K08E4.1.2 | Uncharacterized protein. | Transcription elongation factor SPT5; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. Belongs to the SPT5 family. | 0.553 |
Y73B3A.8 | F39F10.5 | Y73B3A.8.1 | F39F10.5.1 | annotation not available | Uncharacterized protein. | 0.555 |
Y73B3A.8 | mdt-17 | Y73B3A.8.1 | Y113G7B.18b.1 | annotation not available | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). | 0.880 |
Y73B3A.8 | rpb-12 | Y73B3A.8.1 | F23B2.13a.1 | annotation not available | RNA Polymerase II (B) subunit. | 0.930 |
Y73B3A.8 | rpb-2 | Y73B3A.8.1 | C26E6.4.1 | annotation not available | DNA-directed RNA polymerase II subunit RPB2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is [...] | 0.920 |
Y73B3A.8 | rpb-3 | Y73B3A.8.1 | C36B1.3.1 | annotation not available | RPOLD domain-containing protein. | 0.922 |
Y73B3A.8 | rpb-4 | Y73B3A.8.1 | F43E2.2.1 | annotation not available | RPOL4c domain-containing protein. | 0.925 |
Y73B3A.8 | rpb-5 | Y73B3A.8.1 | H27M09.2.1 | annotation not available | DNA-directed RNA polymerases I, II, and III subunit RPABC1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB5 is part of the lower [...] | 0.933 |
Y73B3A.8 | rpb-6 | Y73B3A.8.1 | C06A1.5.1 | annotation not available | Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2; DNA-dependent RNA polymerases catalyze the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB6 is part of t [...] | 0.964 |
Y73B3A.8 | rpb-7 | Y73B3A.8.1 | Y54E10BR.6.1 | annotation not available | S1 motif domain-containing protein. | 0.922 |
Y73B3A.8 | spt-5 | Y73B3A.8.1 | K08E4.1.2 | annotation not available | Transcription elongation factor SPT5; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. Belongs to the SPT5 family. | 0.885 |
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