STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F40F4.6Protein irg-7; Plays a role in innate immunity, probably via the atf-7 pathway, to confer resistance to pathogenic bacteria. May also play a role in the regulation of longevity (2214 aa)    
Predicted Functional Partners:
T25C12.3
Uncharacterized protein; Protein T25C12.3 (T25C12.3) mRNA, complete cds
   
 
0.999
Y34B4A.9
Uncharacterized protein; Protein Y34B4A.9 (Y34B4A.9) mRNA, complete cds
   
   0.999
F19C7.1
Uncharacterized protein; Protein F19C7.1 (F19C7.1) mRNA, complete cds
   
   0.998
LLC1.2
Uncharacterized protein; Protein LLC1.2, isoform a
   
   0.998
T20D3.2
Uncharacterized protein; Protein T20D3.2 (T20D3.2) mRNA, complete cds
   
   0.998
F28B4.3
Uncharacterized protein; Protein F28B4.3 (F28B4.3) mRNA, complete cds
   
  
0.990
R09H10.5
Uncharacterized protein; Protein R09H10.5 (R09H10.5) mRNA, complete cds
   
   
0.984
K12H4.7
Putative serine protease K12H4.7; Protein K12H4.7, isoform b (K12H4.7) mRNA, complete cds
   
  
 0.983
C12D12.1
Uncharacterized protein; Protein C12D12.1, isoform b
   
    0.981
F56C9.7
Uncharacterized protein; Protein F56C9.7 (F56C9.7) mRNA, complete cds
   
    0.981
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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