Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
T04C12.8 | Y44E3A.6 | T04C12.8.2 | Y44E3A.6b.1 | Uncharacterized protein. | FHA domain-containing protein. | 0.618 |
T04C12.8 | car-1 | T04C12.8.2 | Y18D10A.17.1 | Uncharacterized protein. | Cytokinesis, Apoptosis, RNA-associated. | 0.605 |
T04C12.8 | cgh-1 | T04C12.8.2 | C07H6.5.1 | Uncharacterized protein. | ATP-dependent RNA helicase cgh-1; Probable RNA helicase required for oocyte and sperm function. Also required to prevent the physiological germline apoptosis mechanism killing essentially all developing oocytes. Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily. | 0.920 |
T04C12.8 | dcap-1 | T04C12.8.2 | Y55F3AM.12.1 | Uncharacterized protein. | mRNA_decap_C domain-containing protein. | 0.918 |
T04C12.8 | dcap-2 | T04C12.8.2 | F52G2.1b.1 | Uncharacterized protein. | mRNA-decapping enzyme 2; RNA-decapping enzyme although it does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylguanosine-capped RNAs. Belongs to the Nudix hydrolase family. DCP2 subfamily. | 0.923 |
T04C12.8 | lsm-1 | T04C12.8.2 | F40F8.9.2 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | 0.559 |
T04C12.8 | patr-1 | T04C12.8.2 | F43G6.9.1 | Uncharacterized protein. | Protein PAT1 homolog 1; RNA-binding protein involved in deadenylation-dependent decapping of mRNAs, leading to the degradation of mRNAs. Acts as a scaffold protein that connects deadenylation and decapping machinery (By similarity); Belongs to the PAT1 family. | 0.600 |
T04C12.8 | smg-2 | T04C12.8.2 | Y48G8AL.6.2 | Uncharacterized protein. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.483 |
T04C12.8 | xrn-1 | T04C12.8.2 | Y39G8C.1.2 | Uncharacterized protein. | 5'-3' exoribonuclease 1. | 0.714 |
Y44E3A.6 | T04C12.8 | Y44E3A.6b.1 | T04C12.8.2 | FHA domain-containing protein. | Uncharacterized protein. | 0.618 |
Y44E3A.6 | car-1 | Y44E3A.6b.1 | Y18D10A.17.1 | FHA domain-containing protein. | Cytokinesis, Apoptosis, RNA-associated. | 0.585 |
Y44E3A.6 | ccf-1 | Y44E3A.6b.1 | Y56A3A.20.1 | FHA domain-containing protein. | CCR4-NOT transcription complex subunit 7; Catalytic component of the CCR4-NOT complex which is one of the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation, miRNA-mediated repression, translational repression during translational initiation and general transcription regulation. Additional complex functions may be a consequence of its influence on mRNA expression; Belongs to the CAF1 family. | 0.442 |
Y44E3A.6 | cgh-1 | Y44E3A.6b.1 | C07H6.5.1 | FHA domain-containing protein. | ATP-dependent RNA helicase cgh-1; Probable RNA helicase required for oocyte and sperm function. Also required to prevent the physiological germline apoptosis mechanism killing essentially all developing oocytes. Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily. | 0.967 |
Y44E3A.6 | dcap-1 | Y44E3A.6b.1 | Y55F3AM.12.1 | FHA domain-containing protein. | mRNA_decap_C domain-containing protein. | 0.995 |
Y44E3A.6 | dcap-2 | Y44E3A.6b.1 | F52G2.1b.1 | FHA domain-containing protein. | mRNA-decapping enzyme 2; RNA-decapping enzyme although it does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylguanosine-capped RNAs. Belongs to the Nudix hydrolase family. DCP2 subfamily. | 0.989 |
Y44E3A.6 | lsm-1 | Y44E3A.6b.1 | F40F8.9.2 | FHA domain-containing protein. | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | 0.857 |
Y44E3A.6 | patr-1 | Y44E3A.6b.1 | F43G6.9.1 | FHA domain-containing protein. | Protein PAT1 homolog 1; RNA-binding protein involved in deadenylation-dependent decapping of mRNAs, leading to the degradation of mRNAs. Acts as a scaffold protein that connects deadenylation and decapping machinery (By similarity); Belongs to the PAT1 family. | 0.968 |
Y44E3A.6 | smg-2 | Y44E3A.6b.1 | Y48G8AL.6.2 | FHA domain-containing protein. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.611 |
Y44E3A.6 | xrn-1 | Y44E3A.6b.1 | Y39G8C.1.2 | FHA domain-containing protein. | 5'-3' exoribonuclease 1. | 0.986 |
car-1 | T04C12.8 | Y18D10A.17.1 | T04C12.8.2 | Cytokinesis, Apoptosis, RNA-associated. | Uncharacterized protein. | 0.605 |
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