STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmbx-1Homeobox domain-containing protein. (424 aa)    
Predicted Functional Partners:
nsy-7
Neuronal SYmmetry.
      
 0.811
srsx-3
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.734
zgpa-1
Zinc finger G-PAtch domain-containing protein homolog.
      
 0.699
sup-37
SUPpressor.
   
  
 0.536
dnj-11
DNaJ domain (Prokaryotic heat shock protein).
   
  
 0.536
igcm-3
ImmunoGlobulin-like Cell adhesion Molecule family.
   
 
 0.535
pcbd-1
Putative pterin-4-alpha-carbinolamine dehydratase.
    
 
 0.524
somi-1
Suppressor of Overexpressed MIcro-RNA.
   
  
 0.463
C18E9.8
Uncharacterized protein.
    
   0.453
nhr-49
Nuclear hormone receptor family member nhr-49; Orphan nuclear receptor. Regulates expression of lipid desaturase, fat-7 ; Belongs to the nuclear hormone receptor family.
   
 
 0.441
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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